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Tuning Derivatives for Causal Fairness in Machine Learning

arXiv.org Machine Learning

Artificial-intelligence systems are becoming ubiquitous in society, yet their predictions typically inherit biases with respect to protected attributes such as race, gender, or age. Classical fairness notions, most notably Statistical Parity (SP), demand that predictions be independent of the protected attributes, but are overly restrictive when these attributes influence mediating variables that are considered business necessities. Recent causal formulations relax SP by distinguishing allowed from not-allowed causal paths and by complementing SP with Predictive Parity (PP), requiring the predictor to replicate the legitimate influence of business-necessities. Existing path-based definitions are mainly practical when applied to categorical attributes. This paper introduces a new framework for fairness in structural causal models that is tailored to continuous protected attributes. We formalize SP and PP through path-specific partial derivatives, establish conditions under which these criteria coincide with prior causal definitions, and characterize when a fair predictor, one that satisfies SP along not-allowed paths while achieving PP along allowed paths, exists. Building on this theory, we propose a fair tuning algorithm that either constructs such a predictor or, when not possible, allows for a trade-off between SP and PP. We present experiments on simulated and real data to evaluate our proposal, compare it with previously proposed methods, and show that it performs better when PP is considered.


Conditional Diffusion Sampling

arXiv.org Machine Learning

Sampling from unnormalized multimodal distributions with limited density evaluations remains a fundamental challenge in machine learning and natural sciences. Successful approaches construct a bridge between a tractable reference and the target distribution. Parallel Tempering (PT) serves as the gold standard, while recent diffusion-based approaches offer a continuous alternative at the cost of neural training. In this work, we introduce Conditional Diffusion Sampling (CDS), a framework that combines these two paradigms. To this end, we derive Conditional Interpolants, a class of stochastic processes whose transport dynamics are governed by an exact, closed-form stochastic differential equation (SDE), requiring no neural approximation. Although these dynamics require sampling from a non-trivial initialization distribution, we show both theoretically and empirically that the cost of this initialization diminishes for sufficiently short diffusion times. CDS leverages this by a two-stage procedure: (1) PT is used to efficiently sample the initial distribution, and then (2) samples are transported via the transport SDE. This combination couples the robust global exploration of PT with efficient local transport. Experiments suggest that CDS has the potential to achieve a superior trade-off between sample quality and density evaluation cost compared to state-of-the-art samplers.





BOAT: Navigating the Sea of In Silico Predictors for Antibody Design via Multi-Objective Bayesian Optimization

arXiv.org Machine Learning

Antibody lead optimization is inherently a multi-objective challenge in drug discovery. Achieving a balance between different drug-like properties is crucial for the development of viable candidates, and this search becomes exponentially challenging as desired properties grow. The ever-growing zoo of sophisticated in silico tools for predicting antibody properties calls for an efficient joint optimization procedure to overcome resource-intensive sequential filtering pipelines. We present BOAT, a versatile Bayesian optimization framework for multi-property antibody engineering. Our `plug-and-play' framework couples uncertainty-aware surrogate modeling with a genetic algorithm to jointly optimize various predicted antibody traits while enabling efficient exploration of sequence space. Through systematic benchmarking against genetic algorithms and newer generative learning approaches, we demonstrate competitive performance with state-of-the-art methods for multi-objective protein optimization. We identify clear regimes where surrogate-driven optimization outperforms expensive generative approaches and establish practical limits imposed by sequence dimensionality and oracle costs.